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Publications

Journal Papers

1.  Dmytro Kosenkov, Leonid Gorb, Manoj Shukla, Oleg Shishkin, Dmytro Hovorun, Michel Mons and Jerzy Leszczynski „Kinetic simulation of Gas Phase Experiments: Cytosine and Guanine Tautomerization“ (Pending for Publication)

2.  A. Michalkova, D. Kosenkov, L. Gorb, J. Leszczynski „Thermodynamics and Kinetics of Intramolecular Water Assisted Proton Transfer in Na+-1-Methylcytosine Water Complexes“ J. Phys. Chem. B. 2008, 112(29), 8624-8633, DOI: 10.1021/jp801807x

3.  Yana Kholod, Dmytro Kosenkov, Sergiy Okovytyy, Leonid Gorb, Mohammad Qasim, and Jerzy Leszczynski „CL-20 Photodecomposition: Ab Initio Foundations for Identification of Products“ Spectrochimica Acta A: Molecular and Biomolecular Spectroscopy 2008,71 (1), 230-237, 2008, DOI: 10.1016/j.saa.2007.12.021

4.  Dmytro Kosenkov, Leonid Gorb, Oleg V. Shishkin, Jirí Šponer and Jerzy Leszczynski „Tautomeric Equlibrium, Stability and Hydrogen Bonding in 2'-Deoxyguanosine-Monophosphate Complexed with Mg2+“ J. Phys. Chem. B. 2008, 112(1), 150-157, DOI: 10.1021/jp075888t

5.  G.I. Dovbeshko, O.P. Gnatyuk, V.I. Chegel, Y.M. Shirshov, D.V. Kosenkov, E.A. Andreev, H.A.  Tajmir-Riahi, P.M. Lytvyn „Gold and colloidal gold surface influence on DNA conformational change“ Semiconductor Physics, Quantum Electronics and Optoelectronics, 2004, 7(3), 318-325, Abstract Full: PDF

6.  Olena P. Repnytska, Galina I. Dovbeshko, Volodymyr P. Tryndiak, Igor M. Todor and Dmitriy V. Kosenkov „Structural organisation of nucleic acids from tumour cells“ Faraday Discuss. 2003, 126, 61-76, DOI: 10.1039/b304904c Full: PDF

Articles in Books

1.  G.I. Dovbeshko, O.P. Paschuk, O.M. Fesenko, V.I. Chegel, Yu.M. Shirshov, A.A. Nasarova, D.V. Kosenkov, „Biological Molecule Conformations Probed and Enhanced by Metal and Carbon Nanostructures: SEIRA, AFM and SPR Data“ In Book, Frontiers of Multifunctional Integrated Nanosystems, Ed.: E. Buzaneva, P. Scharff, Kluwer Academic Publishers, 2004, 447-466.

2.  G. Dovbeshko, O. Repnytska, T. Pererva, A. Miruta, D. Kosenkov „Vibrational spectroscopy and principal component analysis for conformational study of virus nucleic acids“ Proceedings of SPIE. Ed. S.Sveshnikov, S. Kostyukevich. SPIE, Washington, 2004, 5507, 309-316, DOI: 10.1117/12.570000

3.  G.I. Dovbeshko, V.I. Chegel, O.P. Paschuk, Yu.M. Shirshov, A. Nasarova, D. Kosenkov, O. Fesenko, „Biological Molecule Conformations Probed and Enhanced by Metal and Carbon Nanostructures“ In Book, Frontiers of Multifunctional Integrated Nanosystems, Ed.: E. Buzaneva, P. Scharff, Kluwer Academic Publishers, 2004, 467-485.

Conference Presentations and Invited Talks

1.  Dmytro Kosenkov, Yana Kholod, Leonid Gorb and Jerzy Leszczynski, „Kinetic Simulation of Gas-Phase Experiments on Nucleobases“, Mississippi EPSCoR State Meeting, April 18, 2008

2.  Dmytro Kosenkov, „Why DNA is a Good Storage for Genetic Information: Quantum Chemical Investigation“, Theory Group Meeting, Department of Chemistry, University of Washington, April 3, 2008

3.  Dmytro Kosenkov, Yana Kholod, Leonid Gorb and Jerzy Leszczynski, „Modeling of Space-Time Distribution of Multi-Component Reacting System. Implication for Prebiotic Evolution“, Book of Abstracts «16th Conference on Current Trends in Computational Chemistry», November 2-3, 2007 Jackson, Mississippi, USA

4.  Dmytro Kosenkov, Leonid Gorb and Jerzy Leszczynski, „Kinetic Simulation of Guanine Desorption in Gas-Phase Experiments“ Book of Abstracts «7th Southern School on Computational Chemistry», April 6-7, 2007, Jackson, Mississippi, USA, P67

5.  Dmytro Kosenkov, Leonid Gorb, and Jerzy Leszczynski, „Resonance-Enhanced Two-Photon Ionization Technique: Computer Simulation“, Book of Abstracts «15th Conference on Current Trends in Computational Chemistry», November 3-4, 2006 Jackson, Mississippi, USA, P88.

6.  Dmytro Kosenkov, Leonid Gorb, Oleg V. Shishkin and Jerzy Leszczynski, „Kinetic Model of Cytosine Bimolecular Tautomerization“ Book of Abstracts «6th Southern School on Computational Chemistry», April 7-8, 2006, Jackson, Mississippi, USA, P49.

7.  Dmytro Kosenkov, Leonid Gorb, Yevgeniy Podolyan and Jerzy Leszczynski, „Tautomeric Transitions in 2'-Deoxy-Guanosine-Monophosphate“, Book of Abstracts «14thConference on Current Trends in Computational Chemistry», November 12-13, 2005 Jackson, Mississippi, USA, P90.

8.  D.V. Kosenkov, G.I. Dovbeshko, O.V. Shishkin, L. Gorb, J. Leszczynski, R.I. Zubatyuk, „Molecular Structure of β-D-glucosylhydroxymethyluracil: a DFT Investigation“, Book of Abstracts «1st International Symposium on Methods and Applications of Computational Chemistry», June 30-July 1, 2005 Kharkiv, Ukraine, P44.

9.  G.I. Dovbeshko, O.V. Shishkin, L. Gorb, J. Leszczynski, R.I. Zubatyuk and .D.V. Kosenkov „Molecular Structure of Queuosine: A DFT Study“ Book of Abstracts «13th Conference on Current Trends in Computational Chemistry», November 12-13, 2004 Jackson, Mississippi, USA, P47.

10.  G.I. Dovbeshko, O.V. Shishkin, L. Gorb, J. Leszczynski, R.I. Zubatyuk and D.V. Kosenkov „The role of H-bonding in formation of molecular structure of modified guanosine: DFT calculation and Bader's (AIM) analysis“ Book of Abstracts «International Conference on Hydrogen Bonding Dedicated to Prof. Nikolay. D. Sokolov memory», October 6-10, 2004 Moscow, Klyaz'ma, Russia, P21.

11.  G.I. Dovbeshko, O.P. Gnatyuk, Yu.M. Shirshov, A.A. Nazarova, D.V Kosenkov, E.D. Obraztsova „Conformations of Proteins Induced by Carbon Nanostructures: the SEIRA Data» Book of Abstracts “ 1st Ukrainian Conference on Biological and Medical Physics», September 20-23, 2004 Kharkov, Ukraine, P72.

12.  G.I. Dovbeshko, O.V. Shishkin, L. Gorb, J. Leszczynski, R.I. Zubatyuk and D.V. Kosenkov „Hypermodied Nucleotides Structure and Influence the Nucleic Acid Conformation“ Book of Abstracts «1st Ukrainian Conference on Biological and Medical Physics», September 20-23, 2004 Kharkov, Ukraine, P37.

13.  G. Dovbeshko, A. Nazarova, D. Kosenkov, Ya. Shtogun , K. Ergen „SEIRA Study of serum albumin conformation under interaction with carbonaceous materials“ Book of Abstracts «VIIth International Conference on Molecular Spectroscopy», Wroclaw-Ladek Zdroj, September 11-14, 2003, P23.

14.  G. Dovbeshko, O. Repnytska, T. Pererva, A. Miruta, D. Kosenkov „Application of Vibrational Spectroscopy and Principal Component Analysis for Conformational Study of Virus Nucleic Acids“, Book of Abstracts Faraday Discussion 126, RSC, 2003, Nottingham University, UK.

15.  G. Dovbeshko, O. Repnytska, T. Pererva, A. Miruta, D. Kosenkov „Conformational Study of Virus Nucleic Acids: A SEIRA and Correlational Analysis Data“, Journal of Biomolecular Structure and Dynamics, AdeninePress, New-York, 2003, 20(20), P85
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